RVA (version 0.0.5)

transform.geneid: Transform GeneIDs

Description

This is the function to transform the input gene id type to another gene id type.

This is the function to transform the input gene id type to another gene id type.

Usage

# S3 method for geneid
transform(gene.names, from = ~gene.id.type, to = ~ct.table.id.type)
# S3 method for geneid
transform(gene.names, from = ~gene.id.type, to = ~ct.table.id.type)

Arguments

gene.names

Genes,in the format of character vector, to be transformed.

from

The gene id format of gene.names, should be one of: ACCNUM, ALIAS, ENSEMBL, ENSEMBLPROT, ENSEMBLTRANS, ENTREZID, ENZYME, EVIDENCE, EVIDENCEALL, GENENAME, GO, GOALL, IPI, MAP, OMIM, ONTOLOGY, ONTOLOGYALL, PATH, PFAM, PMID, PROSITE, REFSEQ, SYMBOL, UCSCKG, UNIGENE, UNIPROT.

to

The new gene id format should be one of: ACCNUM, ALIAS, ENSEMBL, ENSEMBLPROT, ENSEMBLTRANS, ENTREZID, ENZYME, EVIDENCE, EVIDENCEALL, GENENAME, GO, GOALL, IPI, MAP, OMIM, ONTOLOGY, ONTOLOGYALL, PATH, PFAM, PMID, PROSITE, REFSEQ, SYMBOL, UCSCKG, UNIGENE, UNIPROT.