calcAlphaG

This function calculates an aggregated dispersion parameter comprising global cell-to-cell variability of transcript counts and biological variability.

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

calcAlphaG function

<dl><dt>noise</dt>
<dd>List of noise parameters returned by <code>compTBNoise</code>.</dd></dl>

Arguments

Function for calculating an aggregated dispersion parameter — calcAlphaG

<dl>

<dt>noise</dt>
<dd>List of noise parameters returned by <code>compTBNoise</code>.</dd>

</dl>

calcAlphaG: Function for calculating an aggregated dispersion parameter

Description

Usage

Value

Arguments