compentropy

This function computes the transcriptome entropy for each cell.

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

compentropy function

<dl><dt>object</dt>
<dd><code>Ltree</code> class object.</dd></dl>

Arguments

Compute transcriptome entropy of each cell — compentropy

<dl>

<dt>object</dt>
<dd><code>Ltree</code> class object.</dd>

</dl>

compentropy: Compute transcriptome entropy of each cell

Description

Usage

Value

Arguments

Examples