getNode

Extract a vector of all genes corresponding to a given module of a FateID self-organizing map (SOM) of pseudo-time ordered gene expression (or noise) profiles.

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

getNode function

<dl><dt>ps</dt>
<dd>FateID SOM. List object.</dd>
<dt>n</dt>
<dd>Integer number of SOM module.</dd></dl>

Arguments

Extract all genes for a module in a FateID self-orgaizing map — getNode

<dl>

<dt>ps</dt>
<dd>FateID SOM. List object.</dd>


<dt>n</dt>
<dd>Integer number of SOM module.</dd>

</dl>

getNode: Extract all genes for a module in a FateID self-orgaizing map

Description

Usage

Value

Arguments