intestinalData

This dataset contains gene expression values, i. e. transcript counts, of 278 intestinal epithelial cells.

datasets

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

intestinalData function

A sparse matrix (using the Matrix) with cells as columns and genes as rows. Entries are raw transcript counts.

intestinalData: Single-cell transcriptome data of intestinal epithelial cells

Description

Usage

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References