intestinalDataSmall

This dataset is a smaller subset of the original dataset, which contains gene expression values, i. e. transcript counts, of 278 intestinal epithelial cells.
The dataset is included for quick testing and examples. Only cells with &gt;10,000 transcripts per cell and only genes with &gt;20 transcript counts in &gt;10 cells were retained.

datasets

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

intestinalDataSmall function

A sparse matrix (using the Matrix) with cells as columns and genes as rows. Entries are raw transcript counts.

intestinalDataSmall: Single-cell transcriptome data of intestinal epithelial cells

Description

Usage

Arguments

Value

Format

References