RaceID (version 0.3.9)

lineagegraph: Inference of a Lineage Graph

Description

This function assembles a lineage graph based on the cell projections onto inter-cluster links.

Usage

lineagegraph(object, verbose = TRUE)

Value

An Ltree class object with lineage graph-related data stored in slots ltcoord, prtree, and cdata.

Arguments

object

Ltree class object.

verbose

logical. If FALSE then status output messages are disabled. Default is TRUE.

Examples

sc <- SCseq(intestinalDataSmall)
sc <- filterdata(sc)
sc <- compdist(sc)
sc <- clustexp(sc)
sc <- findoutliers(sc)
sc <- comptsne(sc)
ltr <- Ltree(sc)
ltr <- compentropy(ltr)
ltr <- projcells(ltr)
ltr <- lineagegraph(ltr)