plotdiffgenes

This functions produces a barplot of differentially expressed genes derived by the function <code>diffgenes</code>

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

plotdiffgenes function

<dl><dt>z</dt>
<dd>Output of <code>diffgenes</code></dd>
<dt>gene</dt>
<dd>Valid gene name. Has to correspond to one of the rownames of the <code>ndata</code> slot of the <code>SCseq</code> object.</dd></dl>

Arguments

Barplot of differentially expressed genes — plotdiffgenes

<dl>

<dt>z</dt>
<dd>Output of <code>diffgenes</code></dd>


<dt>gene</dt>
<dd>Valid gene name. Has to correspond to one of the rownames of the <code>ndata</code> slot of the <code>SCseq</code> object.</dd>

</dl>

plotdiffgenes: Barplot of differentially expressed genes

Description

Usage

Value

Arguments

Examples