plotdistanceratio

This function plots a histogram of the ratios of cell-to-cell distances in the original versus the high-dimensional embedded space used as input for
the StemID2 inferences. The embedded space approximates correlation-based distances by Euclidean distances obtained by classical multi-dimensional scaling.
A minimum spanning tree of the cluster centers is overlaid for comparison.

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

plotdistanceratio function

<dl><dt>object</dt>
<dd><code>Ltree</code> class object.</dd></dl>

Arguments

Histogram of Cell-to-Cell Distances in Real versus Embedded Space — plotdistanceratio

<dl>

<dt>object</dt>
<dd><code>Ltree</code> class object.</dd>

</dl>

plotdistanceratio: Histogram of Cell-to-Cell Distances in Real versus Embedded Space

Description

Usage

Value

Arguments