plotjaccard

This functions plots a barchart of Jaccard similarities for the RaceID3 clusters before outlier identification

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

plotjaccard function

<dl><dt>object</dt>
<dd><code>SCseq</code> class object.</dd></dl>

Arguments

Plot Jaccard Similarities — plotjaccard

<dl>

<dt>object</dt>
<dd><code>SCseq</code> class object.</dd>

</dl>

plotjaccard: Plot Jaccard Similarities

Description

Usage

Value

Arguments