plotsaturation

This functions plots the (change in the) mean within-cluster dispersion as a function of the cluster number
and highlights the saturation point inferred based on the saturation criterion applied by RaceID3: The number of clusters where
the change in within-cluster dispersion upon adding further clusters approaches linear behaviour demarcates the saturation
point and is highlighted in blue.

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

plotsaturation function

<dl><dt>object</dt>
<dd><code>SCseq</code> class object.</dd>
<dt>disp</dt>
<dd>logical. If <code>FALSE</code>, then the change of the within-cluster dispersion is plotted. if <code>TRUE</code> the actual dispersion
is plotted. Default is <code>FALSE</code></dd></dl>

Arguments

Plot Saturation of Within-Cluster Dispersion — plotsaturation

<dl>

<dt>object</dt>
<dd><code>SCseq</code> class object.</dd>


<dt>disp</dt>
<dd>logical. If <code>FALSE</code>, then the change of the within-cluster dispersion is plotted. if <code>TRUE</code> the actual dispersion
is plotted. Default is <code>FALSE</code></dd>

</dl>

plotsaturation: Plot Saturation of Within-Cluster Dispersion

Description

Usage

Value

Arguments