projenrichment

This function plots a heatmap of the enrichment ratios of cells on significant links.

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).

Dominic Grc3<bc>n

RaceID

Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Dominic Grün

projenrichment function

<dl><dt>object</dt>
<dd><code>Ltree</code> class object.</dd></dl>

Arguments

Enrichment of cells on inter-cluster links — projenrichment

<dl>

<dt>object</dt>
<dd><code>Ltree</code> class object.</dd>

</dl>

projenrichment: Enrichment of cells on inter-cluster links

Description

Usage

Value

Arguments