bootstrapPairs

<p>Pair IDs (one unique value per pair).</p>

pairID

<p>Bootstrap generation procedure for sampling paired data (e.g. twin data)</p>

deconvolution

DNA methylation

EWAS

surrogate variable

cell mixture


Reference-free method for conducting EWAS while deconvoluting DNA methylation
arising as mixtures of cell types.  The older method
(Houseman et al., 2014,<doi:10.1093/bioinformatics/btu029>) is similar to
surrogate variable analysis (SVA and ISVA), except that it makes additional use
of a biological mixture assumption.
The newer method (Houseman et al., 2016, <doi:10.1186/s12859-016-1140-4>) is similar
to non-negative matrix factorization, with additional constraints
and additional utilities.

E. Houseman

RefFreeEWAS

EWAS using Reference-Free DNA Methylation Mixture Deconvolution

bootstrapPairs function

One Bootstrap Sample for Pairs — bootstrapPairs

One Bootstrap Sample for Pairs

bootstrapPairs: One Bootstrap Sample for Pairs

Description

Usage

Arguments

Value

Details

References

See Also