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Relatedness (version 2.0)

Maximum Likelihood Estimation of Relatedness using EM Algorithm

Description

Inference of relatedness coefficients from a bi-allelic genotype matrix using a Maximum Likelihood estimation, Laporte, F., Charcosset, A. and Mary-Huard, T. (2017) .

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Version

Install

install.packages('Relatedness')

Monthly Downloads

160

Version

2.0

License

AGPL-3

Maintainer

Fabien Laporte

Last Published

November 17th, 2017

Functions in Relatedness (2.0)

BoucleEMacc

C code for the EM
Frequencies

Allele Frequencies
Cross

Crossing matrix
Relatedness-package

Maximum Likelihood Estimation of Relatedness using EM Algorithm
Delta

List of Relatedness Coefficients
Genotype

Genotype Matrix
RelCoef

Relatedness Coefficients Estimation for individuals
RelCoefLine

Relatedness Coefficients Estimation for Lines
RelComb

Computation of Linear Combination of Relatedness Coefficients