graph object and create a
Ragraph object, returning it for use in other functions. The
graph represented by the Ragraph can be laidout in various formats.
agopen(graph, name, nodes, edges, kind = NULL, layout = TRUE, layoutType = "dot", attrs = list(), nodeAttrs = list(), edgeAttrs = list(), subGList = list(), edgeMode = edgemode(graph), recipEdges=c("combined", "distinct"))graphNELpNode objectspEdge objectsgraphvizCapabilities()$layoutTypes for possible values.combinedRagraph
graph is from the package graph-class. The user can specify either the graph parameter and/or a
combination of nodes and edges. If either of the latter
parameters are not specified then graph must be passed in, and
is used in the functions buildNodeList and
buildEdgeList (as appropriate - if nodes is
passed in but edges is not, only buildEdgeList is
called) which are default transformer functions to
generate the pNode and pEdge lists for layout.
The edgeMode argument specifies whether the graph is to be laid
out with directed or undirected edges. This parameter defaults to the
edgemode of the graph argument - note that if graph was
not passed in then edgeMode must be supplied.
The kind parameter works as follows:
graph
object. This is the default and the recommended method.
Strict graphs do not allow self arcs or multi-edges.
If layout is set to TRUE, then the libgraph
routines are used to compute the layout locations for the graph.
Otherwise the graph is returned without layout information.
The subGList parameter is a list describing any subgraphs,
where each element represents a subgraph and is itself a list with up
to three elements. The first element, graph is required and
contains the actual graph object for the subgraph. The second
element, cluster is a logical value indicating if this is a
cluster or a subgraph (a value of TRUE indicates
a cluster, which is also the default value if this element is not
specified). In Graphviz, subgraphs are more of an organizational
mechanism, whereas clusters are laid out separately from the main
graph and then later inserted. The last element of the list,
attrs is used if there are any attributes for this subgraph.
This is a named vector where the names are the attributes and the
elements are the values for those attributes.
For a description of attrs, nodeAttrs and
edgeAttrs, see the Ragraph man page.
The recipEdges argument can be used to specify how to handle
reciprocal edges. The default value, combined will combine any
reciprocated edges into a single edge (and if the graph is directed,
will by default place an arrowhead on both ends of the edge), while
the other option is distinct which will draw to separate
edges. Note that in the case of an undirected graph, every edge of a
graphNEL is going to be reciprocal due to implementation issues.
graphLayout,
Ragraph, plotset.seed(123)
V <- letters[1:10]
M <- 1:4
g1 <- randomGraph(V, M, .2)
z <- agopen(g1,name="foo")
z
z <- agopen(g1,name="foo",layoutType="neato")
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