magic_testdata

<p>A subsampled dataset of epithelial to mesenchymal transition</p>

datasets

MAGIC (Markov affinity-based graph imputation of cells) is a method for addressing technical noise in single-cell data, including under-sampling of mRNA molecules, often termed "dropout" which can severely obscure important gene-gene relationships. MAGIC shares information across similar cells, via data diffusion, to denoise the cell count matrix and fill in missing transcripts. Read more: van Dijk et al. (2018) <DOI:10.1016/j.cell.2018.05.061>.

Scott Gigante

Rmagic

MAGIC - Markov Affinity-Based Graph Imputation of Cells

David van Dijk

magic_testdata function

<p>A matrix with 500 rows and 197 variables</p>

magic_testdata: Fake scRNAseq data for examples

Description

Usage

Arguments

Format