cellCycleKO

The dataset contains lists 
yeast genes that were most influenced by 12 cell cycle related transcription factor 
knockouts. 
The dataset is a list with 3 slots<ol>
<li><code>gl</code> - set of gene lists in a format suitable for 
<code>aggregateRanks</code>;</li>
<li><code>N</code> - number of yeast genes;</li>
<li><code>ref</code> - reference list of cell cycle related genes taken from de 
Lichtenberg et al.</li>
</ol>

data

Methods for aggregating ranked lists, especially lists of
genes. It implements the Robust Rank Aggregation Kolde et al (2012)
<doi:10.1093/bioinformatics/btr709> and some other simple algorithms
for the task. RRA method uses a probabilistic model for aggregation that
is robust to noise and also facilitates the calculation of significance
probabilities for all the elements in the final ranking.

Raivo Kolde

RobustRankAggreg

Methods for Robust Rank Aggregation

Sven Laur

cellCycleKO function

Raivo Kolde &lt;rkolde@gmail.com&gt;

cellCycleKO: A dataset based on Reimand et al and Hu et al.

Description

Arguments

Author

References