logLik.phylopars

Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data (Goolsby et al. 2017). Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.

Eric Goolsby

Rphylopars

Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation

Eric W. Goolsby

Jorn Bruggeman

Cecile Ane

logLik.phylopars function

<dl> <dt>object</dt>
<dd>Fitted phylopars object</dd> <dt>...</dt>
<dd>Further arguments passed to or from other methods.</dd></dl>

Arguments

Extract Log_likelihood — logLik.phylopars

<dl>

 <dt>object</dt>
<dd>Fitted phylopars object</dd>

 <dt>...</dt>
<dd>Further arguments passed to or from other methods.</dd>

</dl>

logLik.phylopars: Extract Log_likelihood

Description

Usage

Arguments