Sample ancestral trees conditional on phased or unphased SNP genotype data. The actual tree sampling is done using a C++ program that is launched within R. The package also contains functions for specifying the tree-sampling settings (pre-processing) and for storing and manipulating the sampled trees (post-processing). More information about sampletrees can be found at http://stat.sfu.ca/statgen/research/sampletrees.html.
| Package: | Rsampletrees |
| Type: | Package |
| Version: | 1.0.3 |
| Date: | 2020-02-21 |
| License: | GPL-2 |
Burkett KM, McNeney B, Graham J. Sampletrees and Rsampletrees: sampling gene genealogies conditional on SNP genotype data. Bioinformatics. 32:1580-2, 2016.