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S4Vectors (version 0.4.0)

S4 implementation of vectors and lists

Description

The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. In addition, a few low-level concrete subclasses of general interest (e.g. DataFrame, Rle, and Hits) are implemented in the S4Vectors package itself (many more are implemented in the IRanges package and in other Bioconductor infrastructure packages).

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Version

Version

0.4.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in S4Vectors (0.4.0)

DataTable-class

DataTable objects
isSorted

Test if a vector-like object is sorted
Rle-class

Rle objects
List-class

List objects
Rle-runstat

Fixed-width running window summaries
Annotated-class

Annotated class
DataFrame-class

DataFrame objects
List-utils

Common operations on List objects
Rle-utils

Common operations on Rle objects
Hits-class

Hits objects
subsetting-internals

Subsetting internals
Vector-class

Vector objects
SimpleList-class

SimpleList objects
S4Vectors internals

S4Vectors internals
Vector-comparison

Compare, order, tabulate vector-like objects
str-utils

Some utility functions to operate on strings