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SEERaBomb (version 2015.2)

SEER and Atomic Bomb Survivor Data Analysis Tools

Description

Creates SEER (Surveillance, Epidemiology and End Results) and A-bomb data binaries from ASCII sources and provides tools for estimating SEER second cancer risks.

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Version

Install

install.packages('SEERaBomb')

Monthly Downloads

278

Version

2015.2

License

GPL (>= 2)

Maintainer

Tomas Radivoyevitch

Last Published

September 7th, 2015

Functions in SEERaBomb (2015.2)

mkSEER

Make R binaries of SEER data.
mapCancs

Map ICD9 and ICD-O3 codes to cancers
Sigurdson

Chromosome translocation versus age data
post1PYO

Get person-years at risk and observed cases after first cancers
mk2D

Make 2D-spline fits of incidences
SEERaBomb-package

SEER and A-Bomb Data Analysis Tools
mkSEERold

Make SEER binaries as before
mkExcel

Make RR Excel file
nvsr

National Vital Statistic Report (nvsr) Data
getPY

Get tsd interval PY
stdUS

The standard population of the US in 2000
mapRegs

Map registry codes to acronyms
mkDF

Convert seerSet to data.frame for gg-plotting
tsd

Compute RR vs tsd
plot2D

Plot 2D cancer incidence splines
simSeerSet

Simulate SEER cancers and population person years
pickFields

Pick SEER fields of interest
seerStats

Summarize SEER data.
getFields

Get fields from SEER SAS file
summary.seerSet

Summary of seerSet object
mapTrts

Map treatment codes to factor
print.seerSet.summary

Prints seerSet.summary objects
getE

Get expected numbers of cases
getBinInfo

Gets the lower and upper limit and index of a tsd bin
fillPYM

Fills age-year person year (PY) matrix
seerSet

Join SEER cancers and PY
mkAbomb

Make Abomb SQLite database
nvsr01

National Vital Statistic Report (nvsr01) Data