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SEERaBomb (version 2016.1)

SEER and Atomic Bomb Survivor Data Analysis Tools

Description

Creates SEER (Surveillance, Epidemiology and End Results) and A-bomb data binaries from ASCII sources and provides tools for estimating SEER second cancer risks.

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Version

Install

install.packages('SEERaBomb')

Monthly Downloads

278

Version

2016.1

License

GPL (>= 2)

Maintainer

Tomas Radivoyevitch

Last Published

April 25th, 2016

Functions in SEERaBomb (2016.1)

Map registry codes to acronyms

Chromosome translocation versus age data

Get expected numbers of cases

Cancer risk vs years Since Diagnosis of other cancer

Make 2D-spline fits of incidences

Summarize SEER data.

Get tsd interval PY

print.seerSet.summary

Prints seerSet.summary objects

Pick SEER fields of interest

Map ICD9 and ICD-O3 codes to cancers

Converts seerSet$L series to a data.frame

Get person-years at risk and observed cases after first cancers

National Vital Statistic Report (nvsr) Data

Join SEER cancers and PY

Gets the lower and upper limit and index of a tsd bin

Make RR Excel file

Mortality vs years Since Diagnosis

National Vital Statistic Report (nvsr01) Data

summary.seerSet

Summary of seerSet object

Make R binaries of SEER data.

Simulate SEER cancers and population person years

Map treatment codes to factor

Make SEER binaries as before

The standard population of the US in 2000

SEERaBomb-package

SEER and A-Bomb Data Analysis Tools

Compute RR vs tsd

Make Abomb SQLite database

Converts a seerSet$L series to a data.frame

Plot 2D cancer incidence splines

Make RR Excel file

Get person-years at risk and observed deaths after cancer

Get person-years at risk and observed cases after first cancers

Fills age-year person year (PY) matrix

Get fields from SEER SAS file