SEERaBomb (version 2019.2)

getDF: Converts a seerSet$L series to a data.frame

Description

Creates a data.frame of observed and expected cases for each first and second cancer and treatment. csd() calls this internally for the most recent time series, so it may not need to be called directly.

Usage

getDF(seerSet,srs=NULL)

Arguments

seerSet

seerSet object produced by csd().

srs

Series. The time series of interest. NULL (default) implies the currently active series, which is the most recent. A number i implies the ith series. A string identifies the series by name (numeric vectors will be coerced to such a string via paste0("b",paste(brks,collapse="_")) where brks = vector of time breakpoints.

Value

A data.frame in long format that can be used by ggplot.

See Also

SEERaBomb-package, csd

Examples

# NOT RUN {
library(SEERaBomb)
load("~/data/SEER/mrgd/cancDef.RData") #load in canc
load("~/data/SEER/mrgd/popsae.RData") # load in popsae
canc=canc%>%select(-reg,-recno,-agerec,-numprims,-COD,
          -age19,-age86,-radiatn,-ICD9,-db,-histo3) 
popsa=popsae%>%group_by(db,race,sex,age,year)%>%summarize(py=sum(py)) # sum on regs
pm=seerSet(canc,popsa,Sex="male",ageStart=0,ageEnd=100) #pooled (races) male seerSet
pm=mk2D(pm,secondS=c("AML","MDS"))
firstS=c("NHL","MM")
pm=csd(pm,brkst=c(0,1,5),trts=c("rad","noRad"),firstS=firstS)
pm$DF 
getDF(pm)
# }