check.path

Takes as arguments two vectors of IDs and test whether they have a common
ID.

internal

Implements estimation methods for shrinkage covariance matrices
using user-specified covariance targets. The covariance target is a structured
matrix towards which the unbiased sample covariance is shrunk, optionally
incorporating prior knowledge. Shrinkage intensity is computed analytically.
The method is described and applied to microarray gene expression data in
Jelizarow et al. (2010) <doi:10.1093/bioinformatics/btq323>.

Vincent Guillemot

SHIP

Shrinkage Covariance Incorporating Prior Knowledge

Monika Jelizarow

check.path function

<dl><dt>p1</dt>
<dd>Vector of pathways that gene 1 belongs to.</dd>
<dt>p2</dt>
<dd>Vector of pathways that gene 2 belongs to.</dd></dl>

Arguments

Monika Jelizarow and Vincent Guillemot

Author

Check if two genes belong to any common KEGG pathway. — check.path

<dl>

<dt>p1</dt>
<dd>Vector of pathways that gene 1 belongs to.</dd>


<dt>p2</dt>
<dd>Vector of pathways that gene 2 belongs to.</dd>

</dl>

check.path: Check if two genes belong to any common KEGG pathway.

Description

Usage

Value

Arguments

Author

See Also

Examples