target.help

This function is an internal function used to transform the given list of
\(p\) (one vector of pathway IDs per gene) groups into a binary matrix.

internal

Implements estimation methods for shrinkage covariance matrices
using user-specified covariance targets. The covariance target is a structured
matrix towards which the unbiased sample covariance is shrunk, optionally
incorporating prior knowledge. Shrinkage intensity is computed analytically.
The method is described and applied to microarray gene expression data in
Jelizarow et al. (2010) <doi:10.1093/bioinformatics/btq323>.

Vincent Guillemot

SHIP

Shrinkage Covariance Incorporating Prior Knowledge

Monika Jelizarow

target.help function

<dl><dt>genes</dt>
<dd>List of \(p\) items. Each item is the vector of Pathway
IDs a gene belongs to.</dd></dl>

Arguments

Monika Jelizarow and Vincent Guillemot

Author

Transform a list of Pathway IDs into a binary matrix. — target.help

<dl>

<dt>genes</dt>
<dd>List of \(p\) items. Each item is the vector of Pathway
IDs a gene belongs to.</dd>

</dl>

target.help: Transform a list of Pathway IDs into a binary matrix.

Description

Usage

Value

Arguments

Author

See Also

Examples