getoverlappingregions

data.frame().Independent regions found with tab <a rd-options="" href="/link/tabulate.top.indep.features?package=SIM&version=1.42.0" data-mini-rdoc="SIM::tabulate.top.indep.features">tabulate.top.indep.features</a>.

independent_regions

data.frame().Independent regions found with tab <a rd-options="" href="/link/tabulate.top.dep.features?package=SIM&version=1.42.0" data-mini-rdoc="SIM::tabulate.top.dep.features">tabulate.top.dep.features</a>.

dependent_regions

method to estimate the overlapping regions, either "union" or "overlapping".
                  <code>overlapping</code> outputs only the overlapping parts of the overlapping regions.
                  <code>union</code> outputs the whole region. Say independent region = 1-10, dependent region = 5-12. The output is 1-12.

method


	Generates a table with overlapping regions.


misc

Finds associations between two human genomic datasets.

Renee X de Menezes

Integrated Analysis on two human genomic datasets

getoverlappingregions function

data.frame().Independent regions found with tab <a href="tabulate.top.indep.features" rd-options="">tabulate.top.indep.features</a>.

data.frame().Independent regions found with tab <a href="tabulate.top.dep.features" rd-options="">tabulate.top.dep.features</a>.

method to estimate the overlapping regions, either "union" or "overlapping".
                  <code>overlapping</code> outputs only the overlapping parts of the overlapping regions.
                  <code>union</code> outputs the whole region. Say independent region = 1-10, dependent region = 5-12. The output is 1-12.

Generates a table with overlapping regions.

getoverlappingregions: Get the overlapping regions between independent and dependent regions

Description

Usage

Arguments

Details

See Also

Examples