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SIM (version 1.42.0)

sim.update.chrom.table: Update the chromomosome table

Description

A function to update the genomic positions of chromosome arms. Base locations of the start and end of chromosome arms should be used from the same organism and build of genome as the location provided as annotation with the datasets.

Usage

sim.update.chrom.table(db = "homo_sapiens_core_40_36b")

Arguments

db
database name

Value

Chromosome table chrom.table.

Details

This functions requires library RMySQL. Currently SIM only supports integrated analysis on the human genome without mitochondrial DNA.

References

http://www.ensembl.org/info/data/mysql.html

See Also

SIM, chrom.table

Examples

Run this code
#youn need internet connection for this!
#sim.update.chrom.table(db = "homo_sapiens_core_40_36b")

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