plot.WGassociation: Function to plot -log p values from an object of class 'WGassociation'
Description
Function to plot -log p values from an object of class 'WGassociation'
Usage
# S3 method for WGassociation
plot(x, ...)
Value
No return value, just the plot
Arguments
x
an object of class 'WGassociation'
...
other graphical parameters
Details
A panel with different plots (one for each mode of inheritance) are plotted. Each of them represents
the -log(p value) for each SNP. Two horizontal lines are also plotted. One one them indicates the nominal
statistical significance level whereas the other one indicates the statistical
significance level after Bonferroni correction.
References
JR Gonzalez, L Armengol, X Sole, E Guino, JM Mercader, X Estivill, V Moreno.
SNPassoc: an R package to perform whole genome association studies. Bioinformatics,
2007;23(5):654-5.