Accessing, subsetting and plotting mouse SNPs.
Description
This package queries the SNPs data sets and makes plots of
genes and SNPs. This package allows users to access these data
sets once they have been compiled into one file and indexed
with Tabix (http://samtools.sourceforge.net/tabix.shtml). There
are functions to retrieve SNPs, subset them for specific
strains, obtain only SNPs that are polymorphic for a subset of
strains, plot SNPs and look for certain allele patterns in
SNPs. We have also added functions to access indels and
structural variants.