findNeighbours

Generic function for finding neighbouring strings, given identified alleles.

Loading, identifying, aggregating, manipulating, and analysing short tandem repeat regions of massively parallel sequencing data in forensic genetics. The analyses and framework implemented in this package relies on the papers of Vilsen et al. (2017) <doi:10.1016/j.fsigen.2017.01.017> and Vilsen et al. (2018) <doi:10.1016/j.fsigen.2018.04.003>. Note: that the parallelisation in the package relies on mclapply() and, thus, speed-ups will only be seen on UNIX based systems.

Sc3<b8>ren Vilsen

STRMPS

Analysis of Short Tandem Repeat (STR) Massively Parallel
Sequencing (MPS) Data

findNeighbours function

<dl><dt>stringCoverageGenotypeListObject</dt>
<dd>A stringCoverageGenotypeList-class object.</dd>
<dt>searchDirection</dt>
<dd>The direction to search for neighbouring strings. Default is -1, indicating a search for '-1' stutters.</dd>
<dt>trace</dt>
<dd>Should a trace be shown?</dd></dl>

Arguments

Find neighbours — findNeighbours

<dl>

<dt>stringCoverageGenotypeListObject</dt>
<dd>A stringCoverageGenotypeList-class object.</dd>


<dt>searchDirection</dt>
<dd>The direction to search for neighbouring strings. Default is -1, indicating a search for '-1' stutters.</dd>


<dt>trace</dt>
<dd>Should a trace be shown?</dd>

</dl>

findNeighbours: Find neighbours

Description

Usage

Value

Arguments