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STRMPS (version 0.6.8)

identifyNoise,stringCoverageList-method: Idenfities the noise.

Description

identifyNoise takes an stringCoverageList-object and identifies the noise based on a signal threshold for every marker in the provided list.

Usage

# S4 method for stringCoverageList
identifyNoise(
  stringCoverageListObject,
  colBelief = "Coverage",
  thresholdSignal = 0.01
)

Value

Returns a list, with an element for every marker in stringCoverageList-object, each element contains the genotype for a given marker.

Arguments

stringCoverageListObject

an stringCoverageList-object, created using the stringCoverage-function.

colBelief

the name of the coloumn used for identification.

thresholdSignal

threshold applied to the signal (generally the coverage) of every string.

Examples

Run this code
# Strings aggregated by 'stringCoverage()'
data("stringCoverageList")

identifyNoise(stringCoverageList, thresholdSignal = 0.03)

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