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SWMPr (version 2.5.0)

Retrieving, Organizing, and Analyzing Estuary Monitoring Data

Description

Tools for retrieving, organizing, and analyzing environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System . These tools address common challenges associated with continuous time series data for environmental decision making.

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Version

Install

install.packages('SWMPr')

Monthly Downloads

736

Version

2.5.0

License

CC0

Maintainer

Last Published

July 16th, 2023

Functions in SWMPr (2.5.0)

decomp_cj

Simple trend decomposition of monthly swmpr data
ecometab

Ecosystem metabolism
metab_day

Identify metabolic days in a time series
import_local

Import local CDMO data
gradcols

Get colors for plots
comb

Combine swmpr data
decomp

Simple trend decomposition
map_reserve

Map a reserve
plot_metab

Plot ecosystem metabolism for a swmpr object
plot_quants

Create a plot of data for a single year overlaid on historical data.
plot.swmpr

Plot swmpr data
hist.swmpr

Plot swmpr using a histogram
parser

Parse web results for swmpr
na.approx.swmpr

Linearly interpolate gaps
decompTs

Decompose a time series
overplot

Plot multiple SWMP time series on the same y-axis
plot_wind

Create a wind rose
param_names

Get parameters of a given type
plot_summary

Plot graphical summaries of SWMP data
oxySol

Dissolved oxygen at saturation
stat_locs

Locations of NERRS sites
site_codes_ind

Obtain metadata for a single reserve
qaqc

QAQC filtering for SWMP data
rem_reps

Remove replicates in nutrient data
single_param

Get CDMO records for a single parameter
subset.swmpr

Subset a swmpr object
smoother

Smooth swmpr data
site_codes

Obtain metadata for all stations
setstep

Format a swmpr time vector
qaqcchk

Summary of QAQC flags in SWMP data
time_vec

Format SWMP datetimestamp
swmpr

Create a swmpr object
aggreswmp

Aggregate swmpr data
calckl

Calculate oxygen mass transfer coefficient
all_params_dtrng

Get CDMO records within a date range
apacpwq

Example water quality data for Apalachicola Bay Cat Point station.
aggremetab

Aggregate metabolism data
all_params

Import current station records from the CDMO
cens_id

Flag observations above/below detection limits
apaebmet

Example weather data for Apalachicola Bay East Bay station.
apacpnut

Example nutrient data for Apalachicola Bay Cat Point station.
apadbwq

Example water quality data for Apalachicola Bay Dry Bar station.