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SWMPr (version 2.5.1)

Retrieving, Organizing, and Analyzing Estuary Monitoring Data

Description

Tools for retrieving, organizing, and analyzing environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System . These tools address common challenges associated with continuous time series data for environmental decision making.

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Version

Install

install.packages('SWMPr')

Monthly Downloads

775

Version

2.5.1

License

CC0

Maintainer

Marcus W. Beck

Last Published

June 24th, 2024

Functions in SWMPr (2.5.1)

hist.swmpr

Plot swmpr using a histogram
import_local

Import local CDMO data
gradcols

Get colors for plots
ecometab

Ecosystem metabolism
decomp_cj

Simple trend decomposition of monthly swmpr data
metab_day

Identify metabolic days in a time series
map_reserve

Map a reserve
decompTs

Decompose a time series
comb

Combine swmpr data
plot_metab

Plot ecosystem metabolism for a swmpr object
oxySol

Dissolved oxygen at saturation
plot_wind

Create a wind rose
parser

Parse web results for swmpr
plot_summary

Plot graphical summaries of SWMP data
decomp

Simple trend decomposition
plot_quants

Create a plot of data for a single year overlaid on historical data.
plot.swmpr

Plot swmpr data
qaqc

QAQC filtering for SWMP data
qaqcchk

Summary of QAQC flags in SWMP data
param_names

Get parameters of a given type
stat_locs

Locations of NERRS sites
site_codes_ind

Obtain metadata for a single reserve
subset.swmpr

Subset a swmpr object
setstep

Format a swmpr time vector
rem_reps

Remove replicates in nutrient data
time_vec

Format SWMP datetimestamp
swmpr

Create a swmpr object
smoother

Smooth swmpr data
na.approx.swmpr

Linearly interpolate gaps
overplot

Plot multiple SWMP time series on the same y-axis
site_codes

Obtain metadata for all stations
single_param

Get CDMO records for a single parameter
apacpwq

Example water quality data for Apalachicola Bay Cat Point station.
calckl

Calculate oxygen mass transfer coefficient
cens_id

Flag observations above/below detection limits
aggremetab

Aggregate metabolism data
aggreswmp

Aggregate swmpr data
apaebmet

Example weather data for Apalachicola Bay East Bay station.
apadbwq

Example water quality data for Apalachicola Bay Dry Bar station.
apacpnut

Example nutrient data for Apalachicola Bay Cat Point station.
all_params_dtrng

Get CDMO records within a date range
all_params

Import current station records from the CDMO