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SYNCSA (version 1.3.4)

Analysis of Functional and Phylogenetic Patterns in Metacommunities

Description

Analysis of metacommunities based on functional traits and phylogeny of the community components. The functions that are offered here implement for the R environment methods that have been available in the SYNCSA application written in C++ (by Valerio Pillar, available at ).

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Version

Install

install.packages('SYNCSA')

Monthly Downloads

417

Version

1.3.4

License

GPL-2

Last Published

January 9th, 2020

Functions in SYNCSA (1.3.4)

cor.matrix

Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
CollectNames

Collect names an entire list
matmult.syncsa

Matrix multiplication
ProgressBAR

Text Progress Bar
matrix.t

Matrix T
belonging

Degree of belonging of species
matrix.x

Matrix X
var.dummy

Generate dummy variable
var.type

Check the type of variables
optimal

Searching for optimal traits
procrustes.syncsa

Procrustes and Partial Procrustes correlations.
permut.vector

Permutate a vector
pca

Principal Components Analysis (PCA) with NA (missing data)
permut.row.matrix

Permutate rows in a matrix
syncsa

SYNCSA
rao.diversity

Rao's quadratic entropy
organize.syncsa

Function for organize data for Package SYNCSA
part.cor

First-order partial correlation coefficient
matrix.p

Matrix P
cent.norm

Matrix centralization and standardization
ADRS

Artificial Data for Run SYNCSA
flona

Hypothetical data for SYNCSA