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SeqMADE (version 1.0)

Network Module-Based Model in the Differential Expression Analysis for RNA-Seq

Description

A network module-based generalized linear model for differential expression analysis with the count-based sequence data from RNA-Seq.

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Version

Install

install.packages('SeqMADE')

Monthly Downloads

95

Version

1.0

License

GPL (>= 2)

Maintainer

Mingli Lei

Last Published

June 27th, 2016

Functions in SeqMADE (1.0)

nbGLMdir

Identify Differential Expression Modules Based on the GLM Model with Up or Down-regulated Change
exprs

Gene Expression Dataset
SeqMADE-package

Network Module-Based Model in the Differential Expression Analysis for RNA-Seq
moduleMatrix

Modulematrix Construction
nbGLMdirperm

Identify Differential Expression Modules Based on the GLM Method by Shuffling the Phenotypic Variables
Factor

Construction of Variable Factors
nbGLM

Identify Differential Expression Modules Based on the Generalized Linear Model
networkModule

NetworkModule