SeqVarTools (version 1.10.0)

pedigree: Pedigree for example data

Description

Pedigree for example data files in SeqArray.

Usage

pedigree

Format

A data.frame with the following columns.

family

Family ID

individ

Individual ID

father

Father ID

mother

Mother ID

sex

Sex

sample.id

sample.id in VCF/GDS files

Source

HapMap

Details

There is one trio in the pedigree.

Examples

data(pedigree)
head(pedigree)
gds <- seqOpen(seqExampleFileName("gds"))
setdiff(seqGetData(gds, "sample.id"), pedigree$sample.id)
seqClose(gds)