Seurat (version 1.2.1)

tsne.plot: Plot tSNE map

Description

Graphs the output of a tSNE analysis Cells are colored by their identity class.

Usage

tsne.plot(object, do.label = FALSE, label.pt.size = 1, label.cex.text = 1, label.cols.use = NULL, ...)

Arguments

object

Seurat object

do.label

FALSE by default. If TRUE, plots an alternate view where the center of each cluster is lebeled

label.pt.size

If do.label is set, the point size

label.cex.text

If label.cex.text is set, the size of the text labels

label.cols.use

If do.label is set, the color palette to use for the points

...

Additional parameters to dim.plot, for example, which dimensions to plot.

Details

This function is a wrapper for dim.plot. See ?dim.plot for a full list of possible arguments which can be passed in here.

See Also

dim.plot