Usage
vlnPlot(object, features.plot, nCol = NULL, ylab.max = 12, do.ret = TRUE, do.sort = FALSE, size.x.use = 16, size.y.use = 16, size.title.use = 20, use.imputed = FALSE, adjust.use = 1, size.use = 1, cols.use = NULL, group.by = "ident")
Arguments
features.plot
Features to plot (gene expression, metrics, PC scores,
anything that can be retreived by fetch.data)
nCol
Number of columns if multiple plots are displayed
ylab.max
Maximum ylab value
do.ret
FALSE by default. If TRUE, returns a list of ggplot objects.
do.sort
Sort identity classes (on the x-axis) by the average
expression of the attribute being potted
size.x.use
X axis font size
size.y.use
Y axis font size
size.title.use
Title font size
use.imputed
Use imputed values for gene expression (default is FALSE)
adjust.use
Adjust parameter for geom_violin
size.use
Point size for geom_violin
cols.use
Colors to use for plotting
group.by
Group (color) cells in different ways (for example, orig.ident)