DietSeurat

object

Preserve the count matrices for the assays specified

counts

Preserve the data slot for the assays specified

data

Preserve the scale.data slot for the assays specified

scale.data

Only keep a subset of features, defaults to all features

features

Only keep a subset of assays specified here

assays

Only keep a subset of DimReducs specified here (if NULL,
remove all DimReducs)

dimreducs

Only keep a subset of Graphs specified here (if NULL, remove
all Graphs)

graphs

Keep only certain aspects of the Seurat object. Can be useful in functions that utilize merge as
it reduces the amount of data in the merge.

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

DietSeurat: Slim down a Seurat object

Description

Usage

Arguments