Seurat (version 3.1.1)

FetchData: Access cellular data

Description

Retreives data (feature expression, PCA scores, metrics, etc.) for a set of cells in a Seurat object

Usage

FetchData(object, vars, cells = NULL, slot = "data")

Arguments

object

Seurat object

vars

List of all variables to fetch, use keyword 'ident' to pull identity classes

cells

Cells to collect data for (default is all cells)

slot

Slot to pull feature data for

Value

A data frame with cells as rows and cellular data as columns

Examples

# NOT RUN {
pc1 <- FetchData(object = pbmc_small, vars = 'PC_1')
head(x = pc1)
head(x = FetchData(object = pbmc_small, vars = c('groups', 'ident')))

# }