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Seurat (version 3.1.1)

PolyDimPlot: Polygon DimPlot

Description

Plot cells as polygons, rather than single points. Color cells by identity, or a categorical variable in metadata

Usage

PolyDimPlot(object, group.by = NULL, cells = NULL,
  poly.data = "spatial", flip.coords = FALSE)

Arguments

object

Seurat object

group.by

A grouping variable present in the metadata. Default is to use the groupings present in the current cell identities (Idents(object = object))

cells

Vector of cells to plot (default is all cells)

poly.data

Name of the polygon dataframe in the misc slot

flip.coords

Flip x and y coordinates

Value

Returns a ggplot object