Seurat (version 3.1.1)

SubsetByBarcodeInflections: Subset a Seurat Object based on the Barcode Distribution Inflection Points

Description

This convenience function subsets a Seurat object based on calculated inflection points.

Usage

SubsetByBarcodeInflections(object)

Arguments

object

Seurat object

...

arguments to be passed to [CalculateBarcodeInflections()]; if provided, will recalculate the inflection points, else will use those already in `object`

Value

Returns a subsetted Seurat object.

Details

See [CalculateBarcodeInflections()] to calculate inflection points and [BarcodeInflectionsPlot()] to visualize and test inflection point calculations.

See Also

CalculateBarcodeInflections BarcodeInflectionsPlot

Examples

# NOT RUN {
pbmc_small <- CalculateBarcodeInflections(
  object = pbmc_small,
  group.column = 'groups',
  threshold.low = 20,
  threshold.high = 30
)
SubsetByBarcodeInflections(object = pbmc_small)

# }