Seurat (version 4.0.1)

PlotClusterTree: Plot clusters as a tree

Description

Plots previously computed tree (from BuildClusterTree)

Usage

PlotClusterTree(object, direction = "downwards", ...)

Arguments

object

Seurat object

direction

A character string specifying the direction of the tree (default is downwards) Possible options: "rightwards", "leftwards", "upwards", and "downwards".

…

Additional arguments to ape::plot.phylo

Value

Plots dendogram (must be precomputed using BuildClusterTree), returns no value

Examples

# NOT RUN {
data("pbmc_small")
pbmc_small <- BuildClusterTree(object = pbmc_small)
PlotClusterTree(object = pbmc_small)

# }