Seurat objectsConvert objects to Seurat objects
# S3 method for CellDataSet
as.Seurat(x, slot = "counts", assay = "RNA", verbose = TRUE, ...)# S3 method for SingleCellExperiment
as.Seurat(
x,
counts = "counts",
data = "logcounts",
assay = "RNA",
project = "SingleCellExperiment",
...
)
An object to convert to class Seurat
Slot to store expression data as
Name to store expression matrices as
Show progress updates
Arguments passed to other methods
name of the SingleCellExperiment assay to store as counts;
set to NULL if only normalized data are present
name of the SingleCellExperiment assay to slot as data.
Set to NULL if only counts are present
Project name for new Seurat object
A Seurat object generated from x