Seurat (version 4.0.1)

merge.SCTAssay: Merge SCTAssay objects

Description

Merge SCTAssay objects

Usage

# S3 method for SCTAssay
merge(
  x = NULL,
  y = NULL,
  add.cell.ids = NULL,
  merge.data = TRUE,
  na.rm = TRUE,
  ...
)

Arguments

x

A Seurat object

y

A single Seurat object or a list of Seurat objects

add.cell.ids

A character vector of length(x = c(x, y)); appends the corresponding values to the start of each objects' cell names

merge.data

Merge the data slots instead of just merging the counts (which requires renormalization); this is recommended if the same normalization approach was applied to all objects

na.rm

If na.rm = TRUE, this will only preserve residuals that are present in all SCTAssays being merged. Otherwise, missing residuals will be populated with NAs.

...

Arguments passed to other methods