Seurat (version 4.3.0.1)

HVFInfo.SCTAssay: Get Variable Feature Information

Description

Get variable feature information from SCTAssay objects

Usage

# S3 method for SCTAssay
HVFInfo(object, selection.method, status = FALSE, ...)

Arguments

object

An object

selection.method

Which method to pull. For HVFInfo and VariableFeatures, choose one from one of the following:

• “vst”

• “sctransform” or “sct”

• “mean.var.plot”, “dispersion”, “mvp”, or “disp”

For SVFInfo and SpatiallyVariableFeatures, choose from:

• “markvariogram”

• “moransi”

status

Add variable status to the resulting data frame

...

Arguments passed to other methods

See Also

HVFInfo

Examples

# Get the HVF info directly from an SCTAssay object
pbmc_small <- SCTransform(pbmc_small)
HVFInfo(pbmc_small[["SCT"]], selection.method = 'sct')[1:5, ]