ScaleFactors

scalefactors

ScaleFactors.VisiumV1

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

Charlotte Darby

Jeff Farrell

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Madeline Kowalski

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

ScaleFactors function

<dl><dt>object</dt>
<dd>An object to get scale factors from</dd>
<dt>...</dt>
<dd>Arguments passed to other methods</dd>
<dt>spot</dt>
<dd>Spot full resolution scale factor</dd>
<dt>fiducial</dt>
<dd>Fiducial full resolution scale factor</dd>
<dt>hires</dt>
<dd>High resolutoin scale factor</dd>
<dt>lowres</dt>
<dd>Low resolution scale factor</dd></dl>

Arguments

Get image scale factors — ScaleFactors

<dl>

<dt>object</dt>
<dd>An object to get scale factors from</dd>


<dt>...</dt>
<dd>Arguments passed to other methods</dd>


<dt>spot</dt>
<dd>Spot full resolution scale factor</dd>


<dt>fiducial</dt>
<dd>Fiducial full resolution scale factor</dd>


<dt>hires</dt>
<dd>High resolutoin scale factor</dd>


<dt>lowres</dt>
<dd>Low resolution scale factor</dd>

</dl>

Get image scale factors

ScaleFactors: Get image scale factors

Description

Usage

Value

Arguments