FetchResiduals_reference

temporal function to get residuals from reference

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

FetchResiduals_reference function

<dl><dt>object</dt>
<dd>A seurat object</dd>
<dt>reference.SCT.model</dt>
<dd>a reference SCT model that should be used
for calculating the residuals</dd>
<dt>features</dt>
<dd>Names of features to compute</dd>
<dt>nCount_UMI</dt>
<dd>UMI counts. If not specified, defaults to
column sums of object</dd>
<dt>verbose</dt>
<dd>Whether to print messages and progress bars</dd></dl>

Arguments

temporal function to get residuals from reference — FetchResiduals_reference

<dl>

<dt>object</dt>
<dd>A seurat object</dd>


<dt>reference.SCT.model</dt>
<dd>a reference SCT model that should be used
for calculating the residuals</dd>


<dt>features</dt>
<dd>Names of features to compute</dd>


<dt>nCount_UMI</dt>
<dd>UMI counts. If not specified, defaults to
column sums of object</dd>


<dt>verbose</dt>
<dd>Whether to print messages and progress bars</dd>

</dl>

temporal function to get residuals from reference

FetchResiduals_reference: temporal function to get residuals from reference

Description

Usage

Arguments