Returns a Seurat object containing Pearson residuals of added
features in its scale.data
Arguments
object
A seurat object
features
Name of features to add into the scale.data
assay
Name of the assay of the seurat object generated by SCTransform
umi.assay
Name of the assay of the seurat object containing UMI matrix
and the default is RNA
clip.range
Numeric of length two specifying the min and max values the
Pearson residual will be clipped to
replace.value
Recalculate residuals for all features, even if they are
already present. Useful if you want to change the clip.range.
na.rm
For features where there is no feature model stored, return NA
for residual value in scale.data when na.rm = FALSE. When na.rm is TRUE, only
return residuals for features with a model stored for all cells.