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Seurat (version 5.0.3)

GetTissueCoordinates.SlideSeq: Get Tissue Coordinates

Description

Get Tissue Coordinates

Usage

# S3 method for SlideSeq
GetTissueCoordinates(object, ...)

# S3 method for STARmap GetTissueCoordinates(object, qhulls = FALSE, ...)

# S3 method for VisiumV1 GetTissueCoordinates( object, scale = "lowres", cols = c("imagerow", "imagecol"), ... )

Arguments

object

An object

...

Arguments passed to other methods

qhulls

return qhulls instead of centroids

scale

A factor to scale the coordinates by; choose from: 'tissue', 'fiducial', 'hires', 'lowres', or NULL for no scaling

cols

Columns of tissue coordinates data.frame to pull

See Also

SeuratObject::GetTissueCoordinates